Chapter 1 Introduction

This sub-tutorial book is for the Modules 4.2 and 5 of Single-cell Workshop at HKU.

You can fork or download this tutorial book (and re-run it) from this GitHub repo: https://github.com/StatBiomed/SingleCell-Workshop-2021

1.1 Contents of this part

Module 4.2: Cell trajectory inference
- Overview of trajectory inference
- RNA velocity
Module 5: Cellular genetic analysis
- Nuclear and mtDNA SNV analysis in single-cell omics
- Copy number variation analysis from scRNA-seq

1.2 Other modules of this workshop

Module 1: Introduction to R by Dr Joshua Ho & lab (Online tutorials)
Module 2: Fundamentals of scRNA-seq analysis by Dr Joshua Ho (Online tutorials)
Module 3: Cell clustering and annotation by Dr Asif Javed (Online tutorials)
Module 4.1: Cell interaction by Dr Asif Javed (Online tutorials)

Note: to build this book, use the following script in R:

bookdown::render_book("index.Rmd", "bookdown::gitbook")