About

Welcome to the Single-cell Analysis Workshop 2021, hosted by School of Biomedical Sciences, University of Hong Kong.

Materials are stored in this GitHub repo: https://github.com/StatBiomed/HKU-single-cell-workshop

Session information

1. Jun 28, 2021 (15:00-18:00): Introduction to R by Dr. Joshua Ho (face-to-face)
2. Jul 05, 2021 (09:00-12:00): Fundamentals of scRNASeq analysis by Dr. Joshua Ho (zoom)
3. Jul 05, 2021 (13:00-16:00): Clustering and cell type identification by Dr. Asif Javed (zoom)
4. Jul 06, 2021 (09:00-12:00): Cell interaction and trajectory analysis by Dr. Asif Javed and Dr. Yuanhua Huang (zoom)
5. Jul 06, 2021 (13:00-16:00): Cellular genetics by Dr. Yuanhua Huang (zoom)

Workshop contents and materials

1. Inroduction to R (Online tutorials)
2. Fundamentals of scRNASeq analysis (Online tutorials)
   • Single cell technology and Cell Ranger
   • Quality control
   • Dimention reduction and visualization
3. Clustering and cell type identification (Online tutorials)
   • Cell clustering
   • Annotation of cell types
4. Cell interaction and trajectory analysis
   • Cell interaction with ligand and receptors (Online tutorials)
   • Trajectory inference and RNA velocity (Online tutorials)
5. Cellular genetics (Online tutorials)
   • Nuclear and mtDNA SNV analysis in single-cell omics
   • Copy number variation estimation from scRNA-seq

Registration (closed)

• Registration deadline: 21 June, 2021 (Monday)

• Updates: we are planning to run again in this Autumn